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ydjP [2019-08-27 09:33:30]
similar to chloroperoxydase
Genomic Context
categories
[category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.4|Sporulation proteins/ other][category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.2|Cell envelope stress proteins (controlled by SigM, V, W, X, Y)][category|SW 6|Groups of genes] → [category|SW 6.6|Poorly characterized/ putative enzymes]Gene
Coordinates
681,547 682,362
The protein
Protein family
[SW|AB hydrolase superfamily] (according to UniProt)Paralogous protein(s)
[protein|AD4702CC69AC7D5FF391F14176881D582DD1C68A|YvaM]: Structure
[PDB|4RNC] (from ''Rhodococcus sp.'', 28%(low identity!!!)Expression and Regulation
Operons
genes
[gene|D30ADD18D86E153482FE2BFC621230FEE5912BF9|yeaA]-[gene|322BE299860795A70EFA78B8E2614CCCC1CE7C87|ydjP]-[gene|1F845CE702BCD10F4DB596E438CE9DB076806B1D|ydjO]
description
[Pubmed|9987136]
sigma factors
[protein|3D974DD2967C7F8FD4E3C2AF42617B8AE9F0296D|SigW]: sigma factor, [Pubmed|9987136], in [regulon|3D974DD2967C7F8FD4E3C2AF42617B8AE9F0296D|SigW regulon][protein|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE]: sigma factor, [Pubmed|15699190], in [regulon|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE regulon]regulation
induced by cold shock [Pubmed|12399512]view in new tabBiological materials
Mutant
MGNA-C223 (ydjP::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2221 NBRP B. subtilis, Japan]BKE06280 ([gene|322BE299860795A70EFA78B8E2614CCCC1CE7C87|ydjP]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE06280 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTTCTCCTCCTTTAGT, downstream forward: _UP4_TAAAGAAAAAGGAATTAGGABKK06280 ([gene|322BE299860795A70EFA78B8E2614CCCC1CE7C87|ydjP]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK06280 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTTCTCCTCCTTTAGT, downstream forward: _UP4_TAAAGAAAAAGGAATTAGGAReferences